PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09317.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 86aa    MW: 10238.7 Da    PI: 7.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09317.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.4e-251386173
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkr 73
                             lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r
  Rsa1.0_09317.1_g00001.1 13 LPVGLRFRPTDEELVRFYLRRKINGHDDDV-KAIREIDICKWEPWDLPgfSVIKTNDSEWLFFCPLDRKYPNGSR 86
                             79*************************999.89***************6448888999**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-27986IPR003441NAC domain
PROSITE profilePS5100527.2121386IPR003441NAC domain
PfamPF023654.3E-101478IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MNQNIKVLTL DSLPVGLRFR PTDEELVRFY LRRKINGHDD DVKAIREIDI CKWEPWDLPG  60
FSVIKTNDSE WLFFCPLDRK YPNGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-21386788NO APICAL MERISTEM PROTEIN
1ut4_B5e-21386788NO APICAL MERISTEM PROTEIN
1ut7_A5e-21386788NO APICAL MERISTEM PROTEIN
1ut7_B5e-21386788NO APICAL MERISTEM PROTEIN
3swm_A6e-213861091NAC domain-containing protein 19
3swm_B6e-213861091NAC domain-containing protein 19
3swm_C6e-213861091NAC domain-containing protein 19
3swm_D6e-213861091NAC domain-containing protein 19
3swp_A6e-213861091NAC domain-containing protein 19
3swp_B6e-213861091NAC domain-containing protein 19
3swp_C6e-213861091NAC domain-containing protein 19
3swp_D6e-213861091NAC domain-containing protein 19
4dul_A5e-21386788NAC domain-containing protein 19
4dul_B5e-21386788NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413531e-100KP641353.1 Brassica napus NAC transcription factor 62-1.1 (NAC62-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149732.13e-58PREDICTED: NAC transcription factor 29
SwissprotQ9SCK62e-55NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A0X9GD101e-58A0A0X9GD10_BRANA; NAC transcription factor 62-1.1
STRINGBra017980.1-P8e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3795022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-56NAC domain containing protein 62